came.utils.preprocess.quick_preprocess¶
- came.utils.preprocess.quick_preprocess(adata: AnnData, hvgs: Sequence | None = None, normalize_data: bool = True, target_sum: float | None = 10000.0, batch_key=None, n_top_genes: int = 2000, n_pcs: int = 30, nneigh: int = 10, metric='cosine', copy: bool = True, **hvg_kwds)¶
Quick preprocess of the raw data.
Notes
if normalize_data is True, an adata with RAW counts is required!