swnn.Builder

class swnn.Builder(stage_order)

The wrapper object for conveniently building both the single-cell graph and the coarse-grained tree.

Parameters

stage_order (Sequence) – the order of stages

See also

stagewise_knn, adaptive_tree

__init__(stage_order)

Methods

__init__(stage_order)
build_graph(X, stage_lbs[, binary_edge, ks, …])	Build multipartite KNN-graph stage-by-stage.
build_tree(group_lbs[, stage_lbs, …])	Adaptatively build the developmental tree from the stagewise-KNN graph.

Attributes

connect	The single-cell graph (connectivities)
connect_bin	The single-cell graph (connectivities) with binary edges
distmat	The single-cell distance graph
edgedf	the voting tree in a node-parent-proportion format
group_lbs	The original group labels
refined_group_lbs	The refined group labels
stage_lbs	The original stage labels