swnn.group_mean_adata

swnn.group_mean_adata(adata, groupby, features=None, binary=False, use_raw=False)

Compute averaged feature-values for each group

Parameters

• adata (AnnData) –

• groupby (str) – a column name in adata.obs

• features – a subset of names in adata.var_names (or adata.raw.var_names)

• binary (bool) – if True, the results will turn to be the non-zeor proportions for all (or the given) features

• use_raw (bool) – whether to access adata.raw to compute the averages.

Returns

Return type

a pd.DataFrame with features as index and groups as columns