Index

_

__init__() (came.AlignedDataPair method) (came.CGCNet method) (came.CGGCNet method) (came.DataPair method)

A

adata_embed_with_values() (in module came.utils.plot) align_adata_vars() (in module came.utils.preprocess)

aligned_datapair_from_adatas() (in module came) AlignedDataPair (class in came)

C

came module, [1], [2] came.pipeline module came.utils.analyze module came.utils.plot module

came.utils.preprocess module CGCNet (class in came) CGGCNet (class in came) compare_modules() (in module came.utils.analyze) compute_common_private() (in module came.utils.analyze)

D

DataPair (class in came)

datapair_from_adatas() (in module came)

E

embed_with_values() (in module came.utils.plot)

G

gather_came_results() (in module came.pipeline) get_homologies() (in module came.utils.preprocess)

group_mean() (in module came.utils.preprocess) group_mean_adata() (in module came.utils.preprocess)

H

heatmap_probas() (in module came.utils.plot)

L

load_dpair_and_model() (in module came) load_example_data() (in module came)

load_hidden_states() (in module came) load_pickle() (in module came)

M

main_for_aligned() (in module came.pipeline) main_for_unaligned() (in module came.pipeline) make_abstracted_graph() (in module came.utils.analyze) make_bipartite_adj() (in module came.utils.preprocess) make_features() (in module came) merge_adata_groups() (in module came.utils.preprocess)

module came, [1], [2] came.pipeline came.utils.analyze came.utils.plot came.utils.preprocess

N

normalize_default() (in module came.utils.preprocess)

P

plot_confus_mat() (in module came.utils.plot) plot_contingency_mat() (in module came.utils.plot) plot_multipartite_graph() (in module came.utils.plot)

plot_stacked_bar() (in module came.utils.plot) preprocess_aligned() (in module came.pipeline) preprocess_unaligned() (in module came.pipeline)

Q

quick_pre_vis() (in module came.utils.preprocess)

quick_preprocess() (in module came.utils.preprocess)

R

remove_adata_groups() (in module came.utils.preprocess)

S

save_hidden_states() (in module came) save_pickle() (in module came)

split_adata() (in module came.utils.preprocess) subset_matches() (in module came.utils.preprocess)

T

take_1v1_matches() (in module came.utils.preprocess)

take_adata_groups() (in module came.utils.preprocess)

U

umap_with_annotates() (in module came.utils.plot)

W

weight_linked_vars() (in module came) (in module came.utils.analyze)

weight_linked_vars_by_expr() (in module came.utils.analyze) wrapper_heatmap_scores() (in module came.utils.plot) wrapper_scale() (in module came.utils.preprocess)